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SwarmDeepSurv: swarm intelligence advances deep survival network for prognostic radiomics signatures in four solid cancers

  • Qasem Al-Tashi
  • , Maliazurina B. Saad
  • , Ajay Sheshadri
  • , Carol C. Wu
  • , Joe Y. Chang
  • , Bissan Al-Lazikani
  • , Christopher Gibbons
  • , Natalie I. Vokes
  • , Jianjun Zhang
  • , J. Jack Lee
  • , John V. Heymach
  • , David Jaffray
  • , Seyedali Mirjalili
  • , Jia Wu

Research output: Contribution to journalArticlepeer-review

Abstract

Survival models exist to study relationships between biomarkers and treatment effects. Deep learning-powered survival models supersede the classical Cox proportional hazards (CoxPH) model, but substantial performance drops were observed on high-dimensional features because of irrelevant/redundant information. To fill this gap, we proposed SwarmDeepSurv by integrating swarm intelligence algorithms with the deep survival model. Furthermore, four objective functions were designed to optimize prognostic prediction while regularizing selected feature numbers. When testing on multicenter sets (n = 1,058) of four different cancer types, SwarmDeepSurv was less prone to overfitting and achieved optimal patient risk stratification compared with popular survival modeling algorithms. Strikingly, SwarmDeepSurv selected different features compared with classical feature selection algorithms, including the least absolute shrinkage and selection operator (LASSO), with nearly no feature overlapping across these models. Taken together, SwarmDeepSurv offers an alternative approach to model relationships between radiomics features and survival endpoints, which can further extend to study other input data types including genomics.

Original languageEnglish
Article number100777
JournalPatterns
Volume4
Issue number8
DOIs
Publication statusPublished - 11 Aug 2023

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

  1. SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well-being
  2. SDG 7 - Affordable and Clean Energy
    SDG 7 Affordable and Clean Energy
  3. SDG 9 - Industry, Innovation, and Infrastructure
    SDG 9 Industry, Innovation, and Infrastructure
  4. SDG 11 - Sustainable Cities and Communities
    SDG 11 Sustainable Cities and Communities
  5. SDG 12 - Responsible Consumption and Production
    SDG 12 Responsible Consumption and Production
  6. SDG 13 - Climate Action
    SDG 13 Climate Action
  7. SDG 17 - Partnerships for the Goals
    SDG 17 Partnerships for the Goals

Keywords

  • cancer
  • CoxPH
  • deepsurv
  • DSML3: Development/pre-production: Data science output has been rolled out/validated across multiple domains/problems
  • feature selection
  • meta-heuristic
  • prognostic biomarkers
  • radiomics signatures
  • survival analysis
  • swarm intelligence
  • SwarmDeepSurv

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